Present/Save Interactive Plot for Publication in .html,.pdf or .docx

Add the interactive plots (see plot_EPR_Specs2D_interact or plot_EPR_Specs3D_interact) to various document formats like .html, .pdf or .docx. Function is based on the saveWidget as well as on the webshot with the help of knitr package functions. Depending on the output format, plot is saved in working/actual directory either as .html or as .png. The file name inherits the name of the object/variable (see argument p and example). Afterwards, during the R markdown or Quarto processing, the image is automatically attached to the document in the above-described format. Therefore, this function is quite handy in interactive notebooks (such as .Rmd or .qmd, please also consult the create_qmdReport_proj function).

Usage

plot_EPR_present_interact(p, size.width = 7, size.height = 5, res.ppi = 200)

Arguments

p

Plot object/variable name.

size.width

Numeric, width of the image/object window in in, default: size.width = 7.

size.height

Numeric, height of the image/object window in in, default: size.height = 5.

res.ppi

Numeric, resolution in ppi, default: res.ppi = 200.

Value

Interactive plot format corresponding to that of the output document. If the desired document format \(\equiv\) .html, interactive plotly graph is saved in working/actual directory in the same format. Otherwise, for .pdf and .docx it is saved as .png bitmap with the resolution of size.with\(\cdot\)res.ppi x size.height\(\cdot\)res.ppi.

See also

Other Visualizations and Graphics: draw_molecule_by_rcdk(), plot_EPR_Specs(), plot_EPR_Specs2D_interact(), plot_EPR_Specs3D_interact(), plot_EPR_Specs_integ(), plot_labels_xyz(), plot_layout2D_interact(), plot_theme_In_ticks(), plot_theme_NoY_ticks(), plot_theme_Out_ticks(), present_EPR_Sim_Spec()

Examples

if (FALSE) { # \dontrun{
## plotting EPR spectrum of verdazyl radical (`verdazyl.rad.data`),
## where the actual plot is stored under
## the `verdazyl.epr.plot.interact` variable name
verdazyl.epr.plot.interact <-
  plot_EPR_Specs2D_interact(data.spectra = verdazyl.rad.data)
#
## afterwards, it is automatically transformed and attached
## to document with the desired format by `knitr`
plot_EPR_present_interact(verdazyl.epr.plot.interact)
#
## remaining image files are stored in the working directory
} # }